using System;

namespace Science.Biology.PopulationGenetics
{
	/// <summary>
	/// Mating Type
	/// -- randomMating
	/// |      
	/// -- non-randomMating 
	///         -- genotype & breedfunctiontype
	///         -- genotype & hierarchicaltype
	///         -- phenotype & breedfunctiontype
	///         -- phenotype & hierarchicaltype 
	/// </summary>
	public class Mating
	{
	    private bool objectiveMating;
		private bool phenotypeMating;     
		private bool hierarchicalMating;

        public Mating()   // random mating
        {
            objectiveMating = false;
            hierarchicalMating = false;
        }

		private double[,] breed;
		public double[,] BreedParameter
		{
			get { return breed; }
     	}

        private int female, male;
        private double modifiedvalue;
        public int WhichFemale
        {
            set { female = value; }
        }
        public int WhichMale
        {
            set { male = value; }
        }
        public double ModifiedValue
        {
            set { modifiedvalue = value; }
        }
        public void SetBreedParameter() // after set
        {
            breed[female, male] = modifiedvalue;
        }


		public void ObjectiveMating(GenotypeFemale fg, GenotypeMale mg) // nonrandom - genotype - objective mating
		{
            phenotypeMating = false;
            objectiveMating = true;
            hierarchicalMating = false;
			breed = new double[fg.NumberOfAllele,mg.NumberOfAllele];
		}
        public void ObjectiveMating(PhenotypeFemale fph, PhenotypeMale mph) // nonrandom - phenotype - objective mating
		{
            phenotypeMating = true;
            objectiveMating = true;
            hierarchicalMating = false;
			breed = new double[fph.NumberOfAllele,mph.NumberOfAllele];
            mapFromGenoToPhenoXX = fph.MapFromGenoToPheno;
            mapFromGenoToPhenoXY = mph.MapFromGenoToPheno;
            numberOfPhenoAlleleXX = fph.NumberOfAllele;
            numberOfPhenoAlleleXY = mph.NumberOfAllele;
		}

	
        public void HierarchicalMating(GenotypeFemale fg, GenotypeMale mg) // nonrandom - genotype - hierarchical mating
        {
            phenotypeMating = false;
            objectiveMating = false;
            hierarchicalMating = true;
        }
        public void HierarchicalMating(PhenotypeFemale fph, PhenotypeMale mph) // nonrandom - phenotype - hierarchicalmating
        {
            phenotypeMating = true;
            objectiveMating = false;
            hierarchicalMating = true;
            mapFromGenoToPhenoXX = fph.MapFromGenoToPheno;
            mapFromGenoToPhenoXY = mph.MapFromGenoToPheno;
            numberOfPhenoAlleleXX = fph.NumberOfAllele;
            numberOfPhenoAlleleXY = mph.NumberOfAllele;
        }


		public bool PhenotypeQ
		{
			get{return phenotypeMating;}
    	}
        public bool ObjectiveQ
        {
            get { return objectiveMating; }
        }
		public bool HierarchicalQ
		{
			get{return hierarchicalMating;}
		}

        private int[] mapFromGenoToPhenoXX;
        private int[] mapFromGenoToPhenoXY;
        public int[] MapFromGenoToPhenoFemale
        {
            get { return mapFromGenoToPhenoXX; }
        }
        public int[] MapFromGenoToPhenoMale
        {
            get { return mapFromGenoToPhenoXY; }
        }

        private int numberOfPhenoAlleleXX;
        private int numberOfPhenoAlleleXY;
        public int NumberOfPhenoAlleleFemale
        {
            get { return numberOfPhenoAlleleXX; }
        }
        public int NumberOfPhenoAlleleMale
        {
            get { return numberOfPhenoAlleleXY; }
        }
	}
}